Spastic paraplegia and psychomotor retardation with or without seizures and HACE1 deficiency

Vanja Nagy, Ronja Hollstein, Tsung-Pin Pai, Michel K. Herde, Pisanu Buphamalai, Paul Moeseneder, Ewelina Lenartowicz, Anoop Kavirayani, Georg Christoph Korenke, Ivona Kozieradzki, Roberto Nitsch, Ana Cicvaric, Francisco J. Monje Quiroga, Matthew A. Deardorff, Emma C. Bedoukian, Yun Li, Gökhan Yigit, Jörg Menche, E. Ferda Perçin, Bernd Wollnik, Christian Henneberger, Frank J. Kaiser, Josef M. Penninger.  HACE1 deficiency leads to structural and functional neurodevelopmental defects.  Neurol Genet Jun 2019, 5 (3) e330; DOI: 10.1212/NXG.0000000000000330

Abstract

Objective We aim to characterize the causality and molecular and functional underpinnings of HACE1 deficiency in a mouse model of a recessive neurodevelopmental syndrome called spastic paraplegia and psychomotor retardation with or without seizures (SPPRS).

Methods By exome sequencing, we identified 2 novel homozygous truncating mutations in HACE1 in 3 patients from 2 families, p.Q209* and p.R332*. Furthermore, we performed detailed molecular and phenotypic analyses of Hace1 knock-out (KO) mice and SPPRS patient fibroblasts.

Results We show that Hace1 KO mice display many clinical features of SPPRS including enlarged ventricles, hypoplastic corpus callosum, as well as locomotion and learning deficiencies. Mechanistically, loss of HACE1 results in altered levels and activity of the small guanosine triphosphate (GTP)ase, RAC1. In addition, HACE1 deficiency results in reduction in synaptic puncta number and long-term potentiation in the hippocampus. Similarly, in SPPRS patient–derived fibroblasts, carrying a disruptive HACE1 mutation resembling loss of HACE1 in KO mice, we observed marked upregulation of the total and active, GTP-bound, form of RAC1, along with an induction of RAC1-regulated downstream pathways.

Conclusions Our results provide a first animal model to dissect this complex human disease syndrome, establishing the first causal proof that a HACE1 deficiency results in decreased synapse number and structural and behavioral neuropathologic features that resemble SPPRS patients.

Han-Xiang Deng   HACE1, RAC1, and what else in the pathogenesis of SPPRS?  Neurol Genet Jun 2019, 5 (3) e326; DOI: 10.1212/NXG.0000000000000326

Spastic paraplegia and psychomotor retardation with or without seizures (SPPRS) is a complex neurodevelopmental disorder with an autosomal recessive inheritance. SPPRS typically shows an infantile onset, starting with hypotonia either at birth or by age 3–4 months, followed by severely impaired global development and delayed early motor milestones.  All patients with SPPRS develop slowly progressive bilateral lower limb spasticity, leaving them wheelchair bound and bed bound by their 20s. In some cases, patients may never walk. Most patients develop seizures in childhood and have a speech delay. Other variable features include ocular abnormalities, sensorineural hearing loss, skeletal abnormalities, obesity, and double incontinence. Some male patients have hypoplastic genitalia. Brain imaging may show generalized cerebral atrophy, ventricular dilatation, hypoplasia of the corpus callosum, and decreased white matter.

By using family-based and unbiased genotype-driven whole-exome sequencing approaches, Hollstein et al. and Akawi et al. identified mutations of HACE1 in several patients with SPPRS.1,2 HACE1 encodes a HECT domain and ankyrin repeat-containing ubiquitin ligase (HACE1), which is involved in specific tagging of target proteins, leading to their subcellular localization or proteasomal degradation. Most HACE1 mutations in patients with SPPRS lead to a premature stop codon, suggesting that loss of HACE1 function causes SPPRS. However, the pathogenic mechanism remains largely unknown.

In this issue, Nagy et al. provide important information for understanding the pathogenic mechanism underlying SPPRS.  They identified 2 novel homozygous truncating mutations in HACE1 in 3 patients from 2 families. More importantly, they performed detailed molecular and phenotypic analyses of Hace1 knockout mice and SPPRS patient fibroblasts. They showed several clinical features in the Hace1 knockout mice, which are similar to those observed in patients with SPPRS, including deficiencies in locomotion and learning/memory, enlarged ventricles, and hypoplastic corpus callosum. Pathologic and neurophysiologic studies demonstrated a reduced number of synaptic puncta and altered hippocampal synaptic transmission. The authors observed increased levels of active Rac1 in the Hace1 knockout mouse brain and SPPRS patient–derived fibroblasts. RAC1 is a small GTPase with diverse roles in signaling, and HACE1 targets RAC1 to the ubiquitin/proteasome system for degradation.  Therefore, the authors hypothesize that upregulation of the RAC1 pathway may underlie the pathogenesis of SPPRS because of defective degradation of RAC1 by HACE1 deficiency. This is the first in vivo study to show a molecular pathway underlying SPPRS.

A total of 11 mutations in 17 SPPRS cases have been reported to date.  Except for a single amino acid deletion (p.Leu832del), all the others are truncation mutations. Although these truncation mutations presumably have almost identical functional consequences, great variations of clinical symptoms and disease severity were observed in these patients with SPPRS, suggesting that other genetic and environmental modifiers influence phenotype expression. It is known that the ankyrin repeats of HACE1 are responsible for substrate recognition, whereas the HECT domain is essential for ubiquitinylation. The p.Leu832del mutation is located in the HECT domain, suggesting that the loss of ubiquitinylation activity, rather than the loss of the entire HACE1 protein, is critical for development of SPPRS.

Loss of HACE1 was initially noted in human malignancies, and Hace1 knockout mice were shown to develop spontaneous, late-onset multiple tumors after age 1 year.  The tumor incidence was almost tenfold higher in the Hace1 knockout homozygotes than the heterozygotes in 2-year-old mice (12% vs 1.3%). Loss of Hace1 also rendered mice susceptible to second environmental and genetic hits for the development of multiple cancers. This led to the hypothesis that HACE1 is a tumor suppressor gene, which prevents tumorigenesis by suppressing cyclin D levels and reactive oxygen species generation. However, the neurodevelopmental phenotype and pathology in the Hace1 knockout mice have not been comprehensively investigated until the present study.

The hypothesis that upregulation of the RAC1 pathway underlies the pathogenesis of SPPRS is compatible with the previous data. It is well known that RAC1 plays an essential role in development and structural plasticity of dendrites and dendritic spines Transgenic mice overexpressing constitutively active RAC1 in Purkinje neurons lead to ataxia and reduced Purkinje neuron axon terminals and smaller but increased number of dendritic spines. Recently, heterozygous missense mutations in RAC1 were identified in developmental disorders with diverse phenotypes. Among 7 RAC1 mutations, p.Tyr64Asp appears to be constitutively active. The patient with this mutation showed some clinical features overlapping with those in SPPRS, including severely impaired global development and delayed early motor milestones, hypoplastic corpus callosum and genitalia, ocular abnormalities, and sensorineural hearing loss. However, marked differences were also observed. Notably, the patient with p.Tyr64Asp showed hypotonia soon after birth, but he did not seem to develop progressive spasticity, a specific feature in SPPRS, even by age 12 years.  This may suggest that upregulation of RAC1 is one of the multiple pathways affected by the HACE1 deficiency in SPPRS.

Upregulation of RAC1 in SPPRS suggests a potential therapeutic approach by using specific pharmacologic inhibition of RAC1.  However, caution should be taken because the development and function of the brain requires RAC1 to be finely tuned, as shown by the observations that either loss (or dominant-negative effect) or gain of RAC1 function led to developmental disorders in humans, and both depletion and overexpression of Rac1 resulted in abnormal phenotypes in Xenopus laevis.

Upregulation of RAC1 may explain a part of the clinical symptoms in SPPRS, but it does not cover the full spectrum. This suggest that HACE1 may have other substrates. Indeed, HACE1 also regulates other small GTPases, including RAB11a, RAB6a, and RAB8a. It has also been reported that Hace1 promotes the stability of Nrf2 and plays an important role in antioxidant response, and loss of hace1 in a mouse model of Huntington disease accelerates motor deficits and exacerbates cognitive and psychiatric phenotypes.

The molecular mechanism by which increased RAC1 leads to the abnormal structure and function of synapses and the pathogenic roles of other HACE1 regulated proteins in the pathogenesis of SPPRS are still not understood. These issues remain to be addressed in future studies.

Vanja Nagy, Ronja Hollstein, Tsung-Pin Pai,  Michel K. Herde, Pisanu Buphamalai, Paul Moeseneder, Ewelina Lenartowicz, Anoop Kavirayani, Georg Christoph Korenke, Ivona Kozieradzki, Roberto Nitsch, Ana Cicvaric, Francisco J. Monje Quiroga, Matthew A. Deardorff, Emma C. Bedoukian, Yun Li, Gökhan Yigit,  View ORCID ProfileJörg Menche, E. Ferda Perçin, Bernd Wollnik.  HACE1 deficiency leads to structural and functional neurodevelopmental defects.  Neurol Genet Jun 2019, 5 (3) e330; DOI: 10.1212/NXG.0000000000000330

Abstract

Objective We aim to characterize the causality and molecular and functional underpinnings of HACE1 deficiency in a mouse model of a recessive neurodevelopmental syndrome called spastic paraplegia and psychomotor retardation with or without seizures (SPPRS).

Methods By exome sequencing, we identified 2 novel homozygous truncating mutations in HACE1 in 3 patients from 2 families, p.Q209* and p.R332*. Furthermore, we performed detailed molecular and phenotypic analyses of Hace1 knock-out (KO) mice and SPPRS patient fibroblasts.

Results We show that Hace1 KO mice display many clinical features of SPPRS including enlarged ventricles, hypoplastic corpus callosum, as well as locomotion and learning deficiencies. Mechanistically, loss of HACE1 results in altered levels and activity of the small guanosine triphosphate (GTP)ase, RAC1. In addition, HACE1 deficiency results in reduction in synaptic puncta number and long-term potentiation in the hippocampus. Similarly, in SPPRS patient–derived fibroblasts, carrying a disruptive HACE1 mutation resembling loss of HACE1 in KO mice, we observed marked upregulation of the total and active, GTP-bound, form of RAC1, along with an induction of RAC1-regulated downstream pathways.

Conclusions Our results provide a first animal model to dissect this complex human disease syndrome, establishing the first causal proof that a HACE1 deficiency results in decreased synapse number and structural and behavioral neuropathologic features that resemble SPPRS patients.